Sentence examples for by sequence alignment using from inspiring English sources
shRNAs were identified by sequence alignment using the Blat algorithm35.
Reads, averaging approximately 250 bases, were mapped on to the human reference genome, NCBI build 36, by sequence alignment using Basic Local Alignment Search Tool (BLAST -like alignment tool (BLAST -like
The extension consists of an additional top node in the HTM topology that stores and compares sequences of input data by sequence alignment using dynamic programming.
Pairwise nucleotide polymorphisms among four strains (K7, S288C, YJM789 and EC1118) were analyzed by sequence alignment using MUMmer 3.0 software.
This allows the user to retrieve proteins from Cildb, either in the whole database or for a given species, by sequence alignment using the NCBI BLAST algorithm.
DOGMA annotations were manually checked by blast searches with orthologous sequences from other Cupressaceae plastomes, and, in some cases, by sequence alignment using MUSCLE version 3.8.31 (Edgar 2004).
The size and genomic positions for the different LmjSIDER2 or LbSIDER2 elements were determined by sequence alignments using ClustalW and manual corrections.
Multiple sequence alignments were performed using Clustal W (Kyoto University, Bioinformatics Center; http://www.genome.jp/tools/clustalw/). Phylogenetic relationships between the CNS strains were performed by sequence alignments using the Clustal X 2.0 software package [ 24].
All the catfish genome contigs involved in potential duplications were retrieved and visually checked by sequence alignments using BLASTN at a cutoff value of 1E-10 and minimum alignment length of 100 bp.
Vector and bacterial contaminated DNA sequences were identified by sequence alignments using megaBLAST to all UniVec and non-redundant bacterial sequences from NCBI respectively, and hits with 95% identity were subsequently masked with N's.
