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In contrast to simple sequence motifs of fixed length, i.e. position specific scoring matrices, pHMMs are suited for identifying motifs that are interrupted by segments of variable length, and are used to characterize position-specific sequence similarities within a family of proteins.
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The Lewis acid groups in the chain are spaced by polyethylene oxide segments of variable length.
In other cases, structural variation in the promoter was caused by insertions/deletions of DNA segments of variable length up to a few hundred nucleotides, which do not belong to any annotated class of repetitive elements.
To determine the SpoIIIE step size, we challenged the motor to translocate a DNA molecule containing two neutral segments of variable lengths separated by a charged base pair.
In the remaining WGS, sequences encoding NH2 and COOH BAP regions, flanked by segments of the central repetitive region of variable lengths, were at the termini of two contigs.
Conserved superimposable regions (core regions) of the catalytic domain were identified based on the 3D-structure alignment, and these consisted of 4 discontinuous sequence segments that are connected by loops of variable structure.
CRISPR loci typically consist of several non-contiguous direct repeats separated by stretches of variable sequences called spacers, which correspond to segments of captured phage and plasmid sequences.
For example, the factor Gal4p, that belongs to the zinc finger class, binds to a pair of conserved regions, separated by a fixed length segment of DNA of variable content.
Regulation of TCR delta and alpha repertoires by local and long-distance control of variable gene segment chromatin structure.
Therefore, the ODE by using the method of variable separation and partitioned method can be expressed for each segment.
A level of abstraction is provided by converting variable length segments of a physiological signal into fixed length feature vectors that capture relevant properties of the segment and the context in which it occurs.
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CEO of Professional Science Editing for Scientists @ prosciediting.com