Sentence examples for by scanning the sequences from inspiring English sources
Putative protein domains were predicted by scanning the sequences against PROSITE and Pfam databases (www.expasy.org and www-ludwig.unil.ch/SEREX).
The metaMicrobesOnline analysis pipeline starts with contig assembly, gene calling, and translation into protein sequences, followed by scanning the sequence against recognized gene and protein domain families [31].
Since the TF binding site region is composed of specific sequences, and only by scanning the sequence region using PWM, we get the network edges.
In order to increase the overall speed of the process, Tagenerator starts by scanning the sequence of interest for occurrences of all the 5' ends and the 3' ends.
Functional patterns in the hinge region, swapped region and full sequence were identified by scanning the sequence of protein structure involved in swapping using ScanProsite (80) with PROSITE (81) data downloaded on November 2010.
Domain families in these six species were identified by scanning the genomic sequences with the set of identifying HMMs from the PFam 24.0 database [ 23], using the default settings.
He found two enzymes by standard methods and two by scanning the DNA sequence when that became available.
We used the PTP domain of human proteins which was identified by scanning the peptide sequence on ExPASy Prosite (http://www.expasy.org/prosite/).org/prosite/
In order to characterise new bacteriocins produced by Streptococcus mutans we perform a complete bioinformatic analyses by scanning the genome sequence of strains UA159 and NN2025.
Since TEs have not been previously identified in S. japonicum, we conducted TE prediction by scanning the genome sequence using REPET software.
