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Jerarca establishes partitions by scanning the dendrogram from the root to the external leaves.
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By scanning the ad for incongruities.
Then the community structure is acquired by cutting the dendrogram at the levels corresponding to the maximum modularity.
The number of clusters (M) is determined by inspecting the dendrogram.
The ultimate clustering results are obtained by slicing the dendrogram at a particular level.
A total of 28 clusters were produced by cutting the dendrogram at height 0.75.
The ordering is given by the dendrogram which is displayed on the side of the heatmap.
By color-coding the dendrogram and the sketchmaps according to these indicators one can readily highlight the key correlations.
This is illustrated by the dendrogram in figure 1.
As reflected by the dendrogram, the samples displayed heterogeneous expression profiles (Supplementary Figures S1A and B).
This grouping pattern corresponds with that of clustering analysis as shown by the dendrogram.
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