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11 12 13 Identified associations are generally small to moderate in size and are influenced by sample origin and size.
Reads of each sample were selected using a Python pipeline that screens the reads for primer sequences, classifying them by sample origin and allocating them in different files.
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collected from birds or the environment, by sample origin between October 2016 and 03 April 2019.
Figure 3. Distributions of low* and highly pathogenic H7N9 virologically positive samples (nLPAI=280; nHPAI=49) collected from birds or the environment, by sample origin between October 2016 and 25 July 2018.
Principal component analysis (PCA) was performed to confirm that there was no systematic variation in the dataset driven by sample origin or assay plate and that there were no outlier samples.
The sequences were grouped by sample origin into four populations of R. solani AG-3: potato tubers from the Northern US; potato stems from Eastern NC; tobacco leaves from Central NC; and tobacco leaves from Southern Brazil.
Considering the possible population stratification, we employed the same logistic regression approach conditioning on the strata defined by sample origins (Northern and Southern Chinese), obtaining a significant level of association of p = 5.75 × 10−6 with OR = 3.29 (95% CI: 1.97, 5.51) (Table 4).
We started by exploring different ways to sample origin and destination cells for each individual in the city.
Branch points of the formed tubes were counted by an observer masked to the sample origin and an average of the replicates determined after unmasking.
Samples origin and barcode.
Convincingly, clustering of expression data from all four methods grouped the experiments together by tumor sample of origin and not by platform.
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