Sentence examples for by running an alignment from inspiring English sources
CASP9 and DFFA were mapped by running an alignment search (BLAT-search) of each of the complete coding sequences (NM_001229 and NM_001229) on 'Golden path' at UCSC (http://genome.ucsc.edu; Figure 1A ).
(iv) Spial can assist in identifying residues that undergo post-translational modifications by running an alignment of sequences that are commonly modified against an alignment of related sequences that are not.
This is done by placing fiducial reference points on the data sets to be aligned, and then running an alignment wizard to perform a rigid body transformation (procrustes method).
As part of the primer design step the uniqueness of the sequence is checked by running a sensitive NUCmer alignment.
There is considerable length variation in the GBSSI introns, so we ruled out the possible effects of non-orthologous intron alignment by running a ML analysis of just the H-genome clade using the exons only, for which the alignment is unambiguous.
As the strand identity of a bisulfite read is a priori unknown, our bisulfite mapping tool Bismark aims to find a unique alignment by running four alignment processes simultaneously.
This correspondence can be obtained either from the biological data (e.g. molecule names) or by running the pairwise alignment between (A1, B1) - (A i, B i ) and (A1, B1) - (B i, A i ), for each i ≠ 1.
The BAC-contig was constructed by running alignment searches of seven markers (D1S508, GATA4H04, D1S214, GGAT3G03, D1S160, D1S503 and D1S244) and all available BAC-end sequences on 'Golden path' at UCSC.
The pipeline (Supplementary Fig. S1) begins by running NextClip, followed by alignment of the output files for the four categories using BWA.
A significant similarity of this region was established by running HHPRED against a collection of alignments assembled from Pfam and other domain alignments (KH, unpublished) (Soding et al, 2005; Punta et al, 2012).
