Sentence examples for by random permutation using from inspiring English sources

The significance of Tajima's D was tested by random permutation using 1,000 replicates in ARLEQUIN.

The significance of Fu's F S and Tajima's D were tested by random permutation using 1000 replicates in ARLEQUIN 3.01 [ 28].

At arrival, animals were assigned to study groups by simple random permutation using ear marks to: 1) peritoneal contamination and infection (PCI) only; 2) PCI + antibiotic prophylaxis, and 3) PCI + antibiotic + G-CSF prophylaxis (n = 18 rats/group).

False discovery rates (FDR) [ 52] were estimated using dChip software (build date: Jan 27 2009) [ 53] by performing 100 random permutations using all 8 samples with p-values < 0.05, expression ratio cut-off = 2.0-fold, and present call cut-off of 20%, yielding a median FDR of 0.07.

Genetic distance was tested against geographic distance by Mantel test with 999 random permutations using GenAlEx 6.2 software (Excoffier et al. 1992).

Statistical significance was established from 10,000 random permutations using the software Arlequin 3.11 [ 42].

Statistical differences among species diversities were assessed by random permutation tests (1000 permutations, using custom R CRAN scripts available from the first author).

A nominal P value of 0.01, corresponding to an FDR of 5% as determined by random permutations, was used to define significantly sex-biased genes.

The false discovery rate – that is, the estimated number of genes in a given set of scored genes that could receive an equal or better score by chance – was calculated by random permutations and used as an indicator of the robustness of the gene expression profile.

Synchronization of [Ca2+]i peaks among multiple cells was analyzed by random sample permutations using a script in Matlab.

FDR was calculated by random permutation of the data 100 times, and the cutoff value of 5% was used to select positive sites.