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The F 1 population of size N is produced by random mating with equal sex ratio.
In each population, selected individuals reproduced by random mating with selfings allowed according to a diallel design in which 80%% of crosses were made.
We simulated a population over 2400 discrete generations with a constant size of 200 individuals having an equal contribution to the following generation and reproducing by random mating with the exclusion of selfing.
LD was generated in this chromosomal segment by random mating with a mutation rate of 2.5 * 10-5 and an effective population size of 500 for 1000 generations, followed by 50 generations of random mating with the population size reduced to 100.
Next, we crossed these lines in a partial diallel design to ensure alleles from all lines are equally represented, and maintained this advanced intercross population by random mating with a large effective population size (N = 300) for at least 25 generations on standard culture medium.
In each population, the best 20 individuals giving the crosses with highest expected bunch production were selected based on their EBV, as described for the previous step of the simulation, and they reproduced by random mating with selfings allowed according to a half diallel design in which 80%% of crosses were made (consequently, 168 different within-population crosses could be made).
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All lines have been maintained by random mating within the flocks.
LD was simulated in a chromosomal segment of 1 cM with one QTL by random mating in a population of size 500 for 1000 generations and in a population of size 100 for 50 generations.
Generation 1 consisted of 110 animals, 10 males and 100 females, produced from random mating of parents from generation 0. Generation 2 consisted of 500 males created by random mating of the parents in generation 1, and 50 000 unrelated females with randomly sampled genetic values.
No one knows yet that in 2093, the RetrOlympic Reboot, featuring only athletes produced by random mating, will be the surprise hit show of the year".
The animals in generation 1001 produced 1000 offspring for generation 1002 by random mating.
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