Sentence examples for by performing pairwise alignment from inspiring English sources

The orthologous protein information was obtained by performing pairwise alignment of the sequences using BLASTp at NCBI (http://blast.ncbi.nlm.nih.gov/Blast.cgi).nih.gov/Blast.cgi

First, we analyzed the sequence similarity of merlin in various vertebrate species, including humans (Homo sapiens), primates (Papio anubis), rats (Rattus norvegicus), chicken (Gallus gallus), and zebrafish (Danio rerio), by performing pairwise alignment of the entire merlin sequence using ClustalW2.

For each pair of the entire scaffolds and the extracted pannier region, we constructed dot plots by performing pairwise-alignment using "nucmer" program in the MUMmer package70 (version 3.1).

Thanks to that, no repeat masking is necessary before performing pairwise alignment of sequences.

We performed pairwise alignment of these two ACBPs using different matrices by fasta and water programs.

We perform pairwise alignment only for the remaining networks.

The extended scaffolds were then used to perform pairwise alignment.

MUSCLE was used to perform pairwise alignment to map UniProtKB protein sequences to PDB [28].

Finer alignments and detection of frameshifts were carried out by inspection of predictable ORFs with eukaryotic start and stop codons and by performing pairwise translation alignments with ORFs from the WSSV genomes in MACSE v. 0.9b1 [ 26].

The program first performs pairwise alignments between all pairs of sequences, lining up the sequences side by side to identify the regions of similarity and difference between sequences.

We performed pairwise alignments between full-length HoxC1a protein sequences detected in teleosts.