Sentence examples for by pathway analysis using from inspiring English sources
Proteins that were significantly up- and down-regulated in C. albicans (Additional file 6) were grouped according to functions by pathway analysis using KEGG pathway of DAVID (threshold: enrichment score >1.5) (Table 1).
Interesting functions can be easily found and tested by pathway analysis using databases [ 15] and/or annotation key words [ 22].
The composition of modules was then assessed by pathway analysis using defined gene ontologies (GO) via the DAVID analysis tool [ 64, 65].
For prediction of the biological function of respective gene profiles, we matched functionally related gene groups to the known pathways by pathway analysis using DAVID linked with KEGG.
In agreement with the prediction, we have now found that tumors with low RBM47 expression tend to have higher expression of Wnt target genes, as determined by pathway analysis using a curated breast cancer Wnt signature (6).
The list of upregulated proteins identified by LC-MS/MS was analyzed by pathway analysis using the network-building tool, Ingenuity Pathways Analysis (IPA; Ingenuity Systems, http://www.ingenuity.com), as previously described [ 51].
We developed the third approach by performing pathway analysis using Panther [ 28] and MetaCore (GeneGo Inc).
Displays a pathway generated by Ingenuity Pathway Analysis using genes differentially expressed between smokers and nonsmokers in BA46 that connect to smoking and smoking related molecules.
This was also supported by canonical pathway analysis using IPA, which identified TLR signalling as a molecular pathway affected by M. bovis infection.
The known pathways of differentially expressed genes associated with metabolism and signalling were investigated by canonical pathway analysis using Ingenuity Pathways Analysis (IPA; Ingenuity Systems http://www.ingenuity.com).com
These genes are involved in ubiquitin mediated protein degradation, lysosomal autophagy, inositol phosphate metabolism, phosphatidylinositol signalling, ErbB signalling as determined by KEGG pathway analysis using DAVID (see Supporting information for references).
