Sentence examples for by pathway analysis software from inspiring English sources

The regulated probes (FDR ≤ 0.05) were reannotated to transform probe IDs into gene IDs recognized by pathway analysis software.

The targets/putative targets of selected miRNAs were also analyzed by Ingenuity pathway analysis software to generate interactive pathways and were compared with the pathways obtained from cDNA microarray data.

Additionally, analysis by Ingenuity Pathway Analysis software http://www.ingenuity.com was performed on two sets of genes.

Our comparison included inflammatory response genes which were classified by Ingenuity Pathway Analysis software.

This included 189 annotated genes with known molecular functions and interactions, as identified by Ingenuity Pathway Analysis software.

To provide insight into the possible biological significance of the 40-gene signature, functional analysis of positively correlated genes (41, including IL6) was carried out by Ingenuity Pathway Analysis software (IPA) [ 28].

Still, analyzing 232 genes up- or downregulated in the non-neoplastic group compared to the normal reference RNA by Ingenuity Pathway Analysis software reveals a map of intermolecular interactions that suggest a strong mitogenic stimulation (data not shown).

We next wanted to identify the biological processes influenced by the engagement of CD49f and HSP60, connexin 45 and CD151 in HUVECs treated with either anti-US28 or anti-UL122 antibodies by using a pathway analysis software (Pathway Studio).

In the first part this study, mRNA profiling of SMF-treated cells coupled with analysis of the microarray data by the Ingenuity Pathway Analysis software tool [ 21- 23] verified that anticipated transcriptional changes – qualitatively consistent with the impact of altered Ca2+ flux or membrane domain fluidity on signaling pathways – did occur.

This conclusion is substantiated by the Ingenuity pathway analysis software (IPA) results which identified the main molecular and cellular biological functions that were significantly affected (Table 3) and also which physiological systems with regard to development and function were involved (Additional file 3).

Additional functional analysis was performed by using an Ingenuity Pathway Analysis software (Ingenuity Systems, Redwood City, CA).