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Strong EST homologies (greater than 95% identity over >100 bp) were identified by parsing the results using an in-house Perl script.
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Furthermore, we computed precision and recall by parsing the result of MegaBLAST [ 21]. 1 Contigs with lengths > 200 bp are counted.
This is done by parsing the BBH results into tables and sorting them out by the presence/absence of a BBH match.
We also obtained estimates of the numbers of nonsynonymous substitutions on each branch by parsing the "rst" result file, which evaluates the probability of ancestral states and of mutations occurring along the branches (PAML 3.15; Yang 1997).
11 32 p.m. | Updated The Times's polling unit is parsing the results of the exit polls, conducted by Edison Research as voters leave voting sites in Arizona and Michigan.
No, we weren't parsing the results, but instead the metaphor overload.
The taxonomic domains were added to the results by parsing the taxa ID from the top match for each query and by retrieving the associated information from the NCBI [ 69].
For each cluster's consensus, we derived likely protein coding sequences by parsing the best BLASTX match and filtering the results using the arbitrary expectation value of 1e-10.
Sample representative terms for each discipline and category are included in Additional file 1: Appendix 1. Metadata of all articles included in the corpus was obtained by parsing the XML of the screened result of the PubMed query directly, including author affiliation (where available) and publication date.
In neither case, the application continues by parsing the information.
Another program written by Perl was used to parse the results and exclude the redundant entries from the initial data set.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.
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CEO of Professional Science Editing for Scientists @ prosciediting.com