Sentence examples for by pair of sequences from inspiring English sources
Gap containing sites were deleted globally or by pair of sequences.
This method counts the number of k-mers (words of size k) shared by a pair of sequences, using it as an approximation of the similarity level.
The resulting mosaic cps locus within this post-PCV7 vaccine-escape lineage, represented by a pair of sequences corresponding to an isolate from Minnesota in 2005, therefore appeared to be a mosaic of the ancestral sequences characteristic of serotype 19F in the 5′ region with an imported wzy gene characteristic of serotype 19A (supplementary fig. S5, Supplementary Material online).
The score ratio is defined as the ratio of the raw BLAST score computed by aligning a pair of sequences to the raw score of each sequence against itself (i.e. maximum score).
A more specific analysis by pairing of amplification sequences, confirmed that the amplicons were consistent with U. parvum in 10/15 patients, and U. urealyticum in 5/15 patients in group 1, and U. urealyticum in 4/4 patients in group 2 (χ-test: p = 0.004).
Critical protein−protein interactions are mediated by a pair of sequence repeats at the C-terminus of BRCA1 called BRCT repeats (for BRCA1 C-terminal repeats).
The nucleotide and amino acid substitution saturation of the different domains was evaluated by plotting, for each pair of sequences, the total number of differences against the number of substitutions inferred from the ML trees (as the sum of the length of all branches linking these two sequences).
This operation is achieved by considering in turn every pair of sequences and subsequently updating the library.
Fragmentary sequences were removed, and data sets were thinned by removing one of every pair of sequences greater than 80% identical in sequence.
Analysis of d N/d S from VAL paralog sequences was performed by separating pairs of sequences produced by a recent duplication from that formed by more ancestral divergences.
The distance matrix calculated by performaing sequence alignment between every pair of sequences within an input metagenome sample.
