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This is well illustrated by our comparative analysis of Xiaoyan 54 and Jing 411 (Table 2).
Besides the 5' and 3'UTR, disparate internal cre elements have been previously described among various rhinoviral serotypes of both HRV-A and HRV-B [ 15], and have been identified by our comparative analysis.
Second, the functional link between MCT8 and TRα2 was suggested by our comparative analysis which demonstrated that much more DE genes in patient fibroblasts were among the selection of genes in the human brain correlated with the combination MCT8/THRA2 than with the combinations MCT8/THRA1 or MCT8/THRB.
Mapping of the short tags onto the genome sequence revealed that of the 28 families predicted by our comparative analysis, 22 showed at least one sequence tag either in exact or very close correspondence to the position of one of the predicted mature sequences (the exceptions being miR403, miR477, miR535, miR828, miR482 and miR845).
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To establish a more global analysis of muscle phenotype we subjected the muscle samples to Affymetrix gene array analysis followed by our comparative array analysis strategy [30], [31].
Having identified Anxa10 and Prnp by our comparative transcriptome analysis as candidate for M-cell-specific genes in mice, we examined their expression pattern in FAE.
Currently the context-based method seems to be the most specific alternative for TF binding site analysis [ 57], as also confirmed by our comparative in silico analysis of the ERE motifs in the salmon GnRH-III Pa promoter [ 34].
The redistribution of H3K14 acetylation in RM confirmed our previous comparative analysis by ChIP-CHIP [ 6].
We start by analyzing a commonly used dataset related to the developmental stages of Drosophila melanogaster and demonstrate the utility of our approach by a comparative analysis of the ARTIVA results with the TESLA results [ 15].
We also demonstrated additional utility of our BC signature by comparative analysis between the USA and the KSA samples reveals marked biological differences in signature.
Our results were supported by a comparative analysis with previous HepG2 gene expression studies.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com