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Our method first selects the sample-level differentiated genes from each individual sample, capturing genes missed by other analysis methods, ascertains the enrichment levels of associated pathways from each of those lists, and then ranks annotated pathways based on the consistency of enrichment levels of individual samples from both sample classes.
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We verified our overall qualitative peak results (e.g. significant variability among BTSCs in sets of promoters bearing a given epigenetic mark) by using other analysis methods.
The data produced by LAMINA is equally suitable for use in other analysis methods.
All other analysis methods achieved convergence.
These QTL were not detected by any other analysis method, nor were they found in other single family analysis.
CYP93C5 (IFS1) has been characterized by other expression analysis methods previously and all data are consistent with our qRT-PCR analysis.
However, SMAD4 with fold change 0.06034, SMAD2 0.4908, and SMAD3 0.02102 still survived as pathway proteins in pbMOO predictions, which were ignored by other pathway analysis methods.
There are other performance analysis methods: theoretical or numerical analysis.
Various other data analysis methods might also be considered.
Performance by the echo-state network was then compared by means of the area under the receiver operating characteristic curve (AUC) with results obtained by two other time series analysis methods by means of a support vector machine (SVM) and a naive Bayes algorithm (NB).
Performance by the echo-state network was then compared by means of the area under the receiver operating characteristic curve (AUC) with results obtained by two other time-series analysis methods by means of a support vector machine and a naive Bayes algorithm.
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