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Exact(13)
Putative SNPs identified from such contigs would have the minor alleles represented by only one sequence.
Pro-CLARANS randomly selects one of C neighbors, C*, which differs by only one sequence.
We also noticed another small inversion that was supported by only one sequence read and caused SNPs at position 18, 20, 21 and 23 (rpsbA- psbA IGS).
We did not find sequences belonging to rare haplogroup X2a in our sample, whereas the other rare haplogroup D4h3 is represented by only one sequence.
The mean coverage of each contig is 2.4 with less than half of the contigs represented by only one sequence read.
This incongruence may have arisen because except for a few predominant superfamilies, 19 and 16 conopeptide groups in C. tribblei and C. lenavati, respectively, were each represented by only one sequence.
Similar(47)
Population diversity indices for the cox1 data set, such as number of haplotypes, haplotype and nucleotide diversity, and pair-wise F ST distances and their significance based on 10,000 permutations were obtained using ARLEQUIN v. 3.01 [ 47] Populations represented by only one sequenced individual were excluded from the analyses.
However, by choosing only one sequence per lineage, we are unable to distinguish substitutions from polymorphisms.
By contrast, only one sequence that classified into the order Erysipelotrichales was discovered in HP diet samples.
In the initial phylogenetic analysis, the number of sequences used for alignment was reduced by keeping only one sequence if more sequences of the same accession formed a monophyletic group.
Tyr9 is substituted in only one sequence (by Phe), and Pro5 is replaced by Tyr or Phe in two sequences from Mycobacterium species.
More suggestions(17)
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