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In a few cases, a risk identified by one method was divided into more than one risk by the other.
McNemar's test was used to test whether number of subjects or teeth with DDE detected only by one method was significantly higher than the other method.
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Their recommendation was based on the Mutual Coverage criterion they defined to measure the extent to which gene sets deemed significant by one method are reproduced by other methods analysed by the authors, based on a collection of >100 experimental data sets.
Second, we test whether a nucleosome predicted by one method is close to a nucleosome predicted by another.
DE genes (only protein coding genes were considered) detected by IMM were intersected with DE genes detected by TMM and DE genes only detected by one method were retrieved.
The multivariate model revealed that RHT was strongly associated with standard testing in the past 6 months, indicating that a person tested by one method is likely to also be tested by another method.
Moreover, 58 proteins (20 out of 20 proteins predicted by two methods and 38 out of 504 proteins predicted by one method) were additionally predicted as PP proteins (Additional file 1).
Furthermore, some TF pairs considered as false positives by one method are considered bona fide cooperative TF pairs in other, for instance YNL216W (Rap1) – YIR018W (Yap5), considered as a potential false positive pair by method C (due to lack of experimental support) and accepted by method N as a part of the same cooperative module.
Only mutations successfully scored by at least one method were included.
Sacrifice of chicken embryos by a schedule one method is not a regulated procedure under UK Home Office rules.
Since each of these tools use different methods for ortholog prediction, orthologs predicted by more than one method are more likely to be accurately predicted.
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