Sentence examples for by motif analyses using from inspiring English sources
A motif search was conducted using MEME Suite [ 27], followed by motif analyses using TOMTOM [ 28], (http://meme.sdsc.edu/meme/intro.html).sdsc.edu/meme/intro.html
MochiView serves as both a motif analysis platform and a feature-rich genome browser, and integrates these features to allow the visualization of motifs across a genome plot and the refinement of motif analyses using data imported by the user into the MochiView database (for example, genome alignments, ChIP data, or expression data).
The complementary strengths and weaknesses of these different experimental technologies makes it advisable to repeat motif enrichment analyses using motif databases based on different technologies.
The conservative motifs among AP2/ERF proteins in plants were clarified by performing multiple alignment analyses using amino acid sequences of the AP2/ERF domain.
The conservative motifs among AP2/ERF proteins in plants were clarified by conducting multiple alignment analyses using amino acid sequences of the AP2/ERF domain.
We identified overrepresented motifs present in the 2 kb regions upstream of Populus NP-like genes by performing in silico analyses using two prediction programs, MEME and MotifClick [ 41, 42].
A combination of BLAST searches, phylogenetic analyses and sequence motif analyses were used to establish the authenticity of opsin sequences recovered from genome analyses.
DNA motifs were analysed using the MEME suite (Bailey et al., 2009).
Similar analyses using Weeder yielded enriched homeodomain-like motifs in many of the subsets searched, but we did not pick out any common novel enriched motifs among those reported by Weeder.
Further SigH-dependent promoters were searched for within the 5´-UTRs of the genes, which exhibited enhanced transcription in the Δ rshA strain in the microarray analyses, by motif searches using the program Bioprospector [ 35].
These 49 sequence motifs were further analysed using STAMP (Step 4, Figure 1).
