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The hits obtained were further screened by molecular docking using FlexX.
This analysis was carried out by molecular docking, using newly modeled structures of the two ribosomal proteins.
HbAHP-25 was designed in silico against CD4 binding domain of gp120 of HIV-1 by molecular docking using Z dock and PROSA softwares.
268 A recent study combined virtual fragment analysis and selection by molecular docking (using five different scoring functions) with an NMR-screening experiment called fluorine chemical shift anisotropy and exchange for screening (FAXS).
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The potential inhibitors were then chosen from the NCI database by Hypo01 model screening and molecular docking using the cdocker docking program.
Jain, A. N. Surflex: Fully automatic flexible molecular docking using a molecular similarity-based search engine.
The efficiency of molecular docking using AutoDock is also dependent on the docking protocol used.
Once synthesized and characterized, their binding modes with MUC1 were studied by molecular docking analysis using Aruglab 4.0.1 and QSAR properties were determined using HyperChem.
The structures have been validated through detailed analysis of the Ludi score values and by molecular docking experiment using FlexX.
The interactions between the compounds and active site residues of H+/K+ ATPase were investigated by molecular docking studies using autodock vina 4.0.
For example, virtual screening by molecular docking is routinely used in computer-aided drug discovery.
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