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The tree was rooted by midpoint and visualized using FigTree (http://tree.bio.ed.ac.uk/software/figtree/).ac.uk/software/figtree/
The most significant QTL for SAM width was shared by midpoint width and mapped to chromosome 8 and explained 19% of the variation.
Both gene-content and sequence family trees are then rooted by midpoint in order to take into account the timing constraints (See Supplementary Text).
The phylogenetic tree of these 'OTU's is built using NJ algorithm (Neighbor Joining, 'nj' function in R) and rooted by midpoint rooting method.
Maximum likelihood (ML) inferences were performed on each multiple aa alignment using RAxML (Stamatakis 2006) with the substitution model and parameters WAG + G + I. Support for nodes in ML trees were obtained from 100 nonparametric bootstrap iterations, and the root of ML trees was determined by midpoint rooting.
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Generally, phylogenetic trees were rooted by midpoint-rooting.
Alignment by midpoints has the benefit of equal temporal deviations between the onsets and offsets of target and nontarget stimuli.
Even if most readers will be familiar with its outcome, Weintraub's tale gains considerable steam by its midpoint, enlivened by its jazzy vernacular.
Studies were stratified by year, as defined by the midpoint of the study period.
The particle equations of motion and the Maxwell's equations are differenced implicitly in time by the midpoint rule and solved concurrently by a Jacobian-free Newton Krylov (JFNK) solver.
Schumacher led by 66 points to 29 by the midpoint of the season.
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