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We first fit the models to the data by maximum likelihood methods and estimate the quantiles of the life distribution of the alloy specimen.
LCA assigns cases into clusters using model-based posterior membership probabilities estimated by maximum likelihood methods.
The non-synonymous to synonymous substitution rate ratio (ω = dN/dS) of 36 BMPR2 orthologs (http://www.ensembl.org, http://www.ncbi.nlm. nih.gov/gene; Figure S1A,B) was estimated by maximum likelihood methods [24] using the CODEML program (PAML4a package) [25]; [25].
However, Cook and Holmes [41] - which generated three distinct phylogenetic trees by maximum likelihood methods using genes NS3, NS5 and entire genome sequences - suggested that mosquito-borne flaviviruses represent an outgroup to the remaining Flavivirus genus members, and tick-borne transmission is a derived trait.
Factor loadings were estimated by maximum likelihood methods with the IBM SPSS Amos 19.0.
The models were fitted and compared by maximum likelihood methods using the "lmer" function of R.
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Phylogenetic tree for K. variicola constructed by maximum likelihood method is shown in Fig. 1.
The evolutionary history of the isolate was conducted by maximum likelihood method.
Open image in new window Fig. 5 Phylogenetic tree based on predicted amino acids encoded by qnorB as determined by maximum likelihood method.
Open image in new window Fig. 3 Phylogenetic tree based on predicted amino acids encoded by napA as determined by maximum likelihood method.
Open image in new window Fig. 4 Phylogenetic tree based on predicted amino acids encoded by nirS as determined by maximum likelihood method.
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