This paper introduces the JStar parallel programming language, which is a Java-based declarative language aimed at discouraging sequential programming, encouraging massively parallel programming, and giving the compiler and runtime maximum freedom to try alternative parallelisation strategies.
It combines a graphical language with massively parallel programming and object paradigm support.
The second component is a computation engine called YARN, which can run massively parallel programs on top of the data stored in HDFS.
Somatic variation of KRAS exon 2 was also analysed by massively parallel pyrosequencing of amplicons with the GS Junior 454 platform.
We created a program called Methpat that facilitates visualization and interpretation of bisulfite sequencing data generated by massively parallel sequencing.
Wheeler, D.A. et al. The complete genome of an individual by massively parallel DNA sequencing.
Yassour, M. et al. Ab initio construction of a eukaryotic transcriptome by massively parallel mRNA sequencing.
Choi, J. W. et al. Whole-genome analyses of Korean native and Holstein cattle breeds by massively parallel sequencing.
These complexes can be stabilized by crosslinking and ligating the crosslinked enhancer and target fragments together, and the interacting elements identified by massively parallel sequencing.
Wang, G.P., Ciuffi, A., Leipzig, J., Berry, C.C. & Bushman, F.D. HIV integration site selection: analysis by massively parallel pyrosequencing reveals association with epigenetic modifications.
