Sentence examples for by mapping to a from inspiring English sources

Whole-genome sequencing was performed on the Illumina HiSeq2000 using previously described protocols for bacterial library preparation and bioinformatics processing [ 14] in which SNVs in mapped nonrepetitive sites were identified by mapping to a CC30-specific reference (MRSA252 [ 21]).

Secondly, short reads will be prone to certain inaccuracies when used to define a transcriptome by mapping to a genome sequence.

Expression measurements from the Affymetrix HT-HG-U133A, the Affymetrix Human Exon 1.0 ST, and a custom Agilent array, were combined by mapping to a transcript database 11,861 total genes.

To employ our methods, contigs should be assembled de novo and can then be ordered and oriented to create pseudo-molecules by mapping to a reference strain using the syntenic path assembly algorithm (Fig. 3) (see Materials and Methods and Results) [30].

Typically, this is done either by mapping to a reference sequence or by de novo assembly to generate draft genomes comprising multiple contiguous sequences (contigs).

The total set of genes represented among the CG258 genomes was identified by mapping to a pan genome sequence for CG258.

For both 454 and Illumina sequences, all reads containing organellar DNA sequences were removed using CLC-BIO Genomic Workbench 7.0.4, by mapping to an in-house developed library of chloroplast and mitochondrial sequences of sunflower and other dicotyledons.

Human and rat sequence-tags were annotated and quantified by mapping to public domain genomes or to a minipig draft genome assembly [R. Schmucki, unpublished data].

The majority of sequenced transcripts were identified by mapping to known small RNA libraries and a considerable proportion of these were miRNAs.

We have previously reported this family and mapped the gene involved by autozygosity mapping to a 36.8 Mb interval flanked by microsatellite markers D10S1208 (35.3 Mb) and D10S676 (72.1 Mb) on chromosome 10cen (Supplementary Material, Fig. S1) (18).

Ribosomal RNA was removed by mapping to A. thaliana 25S and 18S ribosomal RNA sequences using MUMMER [ 64] and filtered by a custom Python script (available upon request).