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Tandem repeats were identified by manual visualization of rice and Arabidopsis physical map.
VOIDOO identified a large number of cavities, of which ambiguous and false positives were filtered out by manual visualization of cavities in the context of predicted cavity lining residues.
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After manual visualization of the sequencing data from both genomes, it appeared that frameshifts were caused by two homopolymer errors due to the sequencing technology at similar positions in the two bacteria.
We then performed manual visualization of differential gene expression in GEXC to confirm and finalize the assigned cell-type enrichment category for each gene in the CNM.
Manual visualization of the results quickly identifies the potential mutation hotspot sites and/or regions within the TCGA UCEC samples; these potential hotspots appear as large orange dots.
In the vRNA design those spots that do not have signal intensities much higher than background (by simple manual visualization, or by statistical measures such as SNR) represent clones that have insufficient concentrations of PCR product possibly due to failed or inefficient PCR reactions, no bacterial growth, or robotic printing errors.
These miscalls were edited out of the final mutation list by manual inspection and visualization with CLC Genomics Workbench.
Discrepancies were verified by manual examination of the sequence traces.
We previously created the Autism Database (AutDB) to provide a publicly available web portal for ongoing collection, manual annotation, and visualization of genes linked to ASD.
and by visualization of the residuals plot.
Manual examinations (such as visualization) of the results have typically been used in those studies, which may provide some valuable information and insights.
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