Sentence examples for by making an alignment from inspiring English sources

To connect the 'Ca. L. solanacearum' contigs, the relationships of the contigs were predicted by making an alignment against 'Ca. L. asiaticus' genome.

In this case, consequent joining of these sections into a single one can considerably increase the statistical significance of a joined region that can be found by making an alignment against matrix M (see Section 2.3).

The second stage uses a heuristic step-by-step algorithm to make an alignment at the residue level by calculating a rotation matrix derived from applying the method suggested by Kabsch [ 26, 27].

The validity of the ML tree based on the multiple alignment was cross-checked by making a pairwise distance clustering tree, which gave perfect agreement in ortholog assignment.

Make an alignment to the SILVA database [32], via NAST [29] as implemented by Mothur [11].

This fact made an alignment difficult and required manual fine-tuning of the alignment algorithm.

Large genome sizes, an abundance of repeated sequences, and polyploidy present challenges to genome-wide SNP discovery using next-generation sequencing (NGS) of total genomic DNA by making alignment and clustering of short reads generated by the NGS platforms difficult, particularly in the absence of a reference genome sequence.

We eliminated all potential duplicates by making pairwise alignments of all zebrafish TFRs and excluding one member of each pair from all further analysis (see Methods).

Sequences have been deposited at the EMBL databank with accession numbers presented in Additional file 3. The mitochondrial cyt b, and the two nuclear exons (IRBP and vWF) were aligned by hand with the ED editor of the software MUST [ 61] by making use of codon alignment (indels were always in multiples of three base pairs long).

While most of today's players vary their shots by making systematic adjustments to their alignment and grip, Van Orman shapes his simply by visualizing them before hitting.

By making miniscule adjustments to the alignment of their detectors, the researchers can "smooth out" the way they will identify and measure these particles when they fall out as debris from proton collisions.