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They are represented in the phylogeny by low support values (bootstrap, posterior support and concordance factors) and are summarized within the multigenic network.
Thus, our reconstruction of the Epd phylogeny strongly agrees with the 2R hypothesis [ 41], providing a good example for the two rounds of genome duplications proposed to have occurred early in the vertebrate lineage; all exceptions found in the inferred topology are highlighted by low support values.
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As previously shown by Grazziotin el al. [ 30], the goo-eating genera Ninia, Atractus, Geophis, Dipsas, Sibynomorphus, Sibon, and Tropidodipsas form two monophyletic assemblages: Clade D, composed by the genera Geophis and Atractus with low support values (<70%/<0.8), and Clade E composed by Ninia, Dipsas, Sibynomorphus, Sibon, and Tropidodipsas with moderate to high support values (70%/1.0).
Although we could not elucidate the divergence time of this genus due to low support values, the wide distribution was formed by recent dispersions via ocean currents based on very low genetic diversity between geographically distant populations.
Despite the general low support values, the phylogenetic placement of Leonerasaurus is robustly supported within the basal nodes of Anchisauria.
Gasterosteiformes and Zoarcidae appeared within Scorpaeniformes, thus rendering this order paraphyletic (albeit with low support values).
But this pattern has low support values [ 6, 12].
Sponge relationships show very low support value.
Silkworm has the largest cluster of species-specific sHSPs which includes 12 genes although the cluster has a relatively low supporting value measured by posterior probability.
The large number of taxa and relatively small number of informative characters resulted in low bootstrap support values for internal nodes; by contrast, the outer nodes received higher bootstrap support (data not shown).
Syntenic analysis helped to identify the origin of lancelet and sea squirt GAPDs, which was not determined with confidence by phylogenetic trees construction because of low branch support values.
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