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Universal primers are available for multiple chloroplast regions but, like mitochondrial regions, the utility of these regions is often limited by low sequence divergence at shallow phylogenetic relatedness.
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Both snake lineages experienced recent (and likely independent) expansion of Bov-B LINEs, indicated by the low sequence divergence among these LINEs within each species (fig 3 A ).
Among all frog LTR REs, Amn-san elements are the most abundant, with multiple genomic copies (>700) followed by Gmr1 and Kobel (Table 2); some of the copies show very low sequence divergence as indicated by the average relatedness values calculated on the basis of the nucleotide and aa sequences of the RT domain.
Clades are separated by 12%to15%5% net corrected p-distance for cytochrome b, with comparatively low sequence divergence within clades.
However, there was low sequence divergence and the vast majority of pairs of individuals differed by only 1 4 nucleotide substitutions.
Also P. betulinus has very low sequence divergence between strains from geographically distant origins, e.g. Canada, Asia and Europe.
Cases of low sequence divergence (<4%) all involve species pairs known as taxonomically problematic.
These positive selections are striking in view of the low sequence divergence among primates in this region.
Although recombinants were often found in tissue sequence populations with high divergence, they were also found in sequence populations with a comparatively low sequence divergence (this is especially apparent in the two lymphoma cases).
In our study, different Adh and LEAFY paralogs showed a relative low sequence divergence (< 0.03).
This could be especially relevant where low sequence divergence prevented the assembler from resolving homeologs.
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