Sentence examples for by intersecting microarray data from inspiring English sources

We describe a methodology to identify transcription factor binding sites and target genes in vivo by intersecting microarray data, computational binding site queries, and evolutionary conservation.

By intersecting the data from three independent screens, six candidates showed a progressive and consistent reduction in colony size upon increasing concentrations of cisplatin (Table 2).

The large deletion reference data set used in our study was obtained by intersecting the data in Supplementary Table 1 from [ 20] with the data in Additional file 4 from [ 21].

Phylogenetic footprinting was performed by intersecting our microarray and HMM results with the UCSC conservation tracks via the UCSC Table Browser functions [30].

A gene set for each transcription factor and cell line was generated by intersecting ChIP-Seq data with promoter annotation (−3 kb from TSS) using Ensembl human genes (version 66), and assigning the intersecting gene promoters to that gene set.

Confidence schemes (see [ 59- 61]) usually address the problem of selecting reliable interactions by intersecting multiple high-throughput data (omic) sets.

(PDF 398 KB) 12284_2013_62_MOESM3_ESM.xlsx Additional file 3: Enrichment and Annotation of predicted by MAMA using microarray data from iron-deficient.

We further verified our findings by intersecting the TBP MO microarray experiment with an independent set of 622 maternal mRNAs (Mathavan et al, 2005), which resulted in an overlap of 143 genes (Supplementary Table V).

This approach has recently been developed to elucidate the complexity of common human diseases by intersecting genotypic, molecular profiling and clinical data in segregating populations (Schadt 2006).

The TF target genes were constructed by intersecting TF-bound genes predicted from ChIPx data with differentially expressed genes [false discovery rate (FDR) ≤ 10%] in TF perturbation data.

To find mutations unique to each genotype, we generated data sets by intersecting mutations from two libraries and excluding mutations from the third.