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Ingenuity Pathway Analysis (IPA; Ingenuity Systems, CA, USA) was used to generate IPA network data by inputting microarray data analysed with Partek GS.
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Hence, in our modeling approach, we have captured the effect of temporal changes in transcription and protein levels by utilizing the microarray data with a three hour time delay as an input to the model.
(PDF 398 KB) 12284_2013_62_MOESM3_ESM.xlsx Additional file 3: Enrichment and Annotation of predicted by MAMA using microarray data from iron-deficient.
The.CEL files from microarray data were input into GeneSpring in GCRMA format.
TAW provided TM1 microarray data and input into the concept.
For microarray data, the input may be a text file of normalised expression data, with probe ids as row ids.
Finally, Part F concludes data input part by inputting observed enzyme levels for reactions.
The second study considers the analysis of biological microarray data of huge input dimensionality coupled with sparse data for the likely prediction of human bladder cancer.
LDB normalized the microarray data and provided input into the microarray study designs.
Although the current statistic was developed for analyzing HiCEP data, it can also be applied to microarray data since the input data (expression matrix) is the same.
The relative ratios of transcript amounts in I-IUdR-treated and I-IUdR-treated samples were compared with microarray data of the matched input RNA sample by taking into account the mean values and standard errors of measurement representing at least three independent replicate experiments for DNA microarray and RT-PCR studies (Table 2).
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