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To this end, we propose two computationally efficient CAS algorithms by implementing a greedy strategy incrementally or decrementally to fully exploit the recursive structure of mean-square-error matrices between consecutive V-BLAST detection stages.
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CD-HIT implements a greedy incremental clustering algorithm, which orders the sequences by decreasing length and makes the longest sequence the representative sequence of the first cluster.
However, all existing work to our knowledge implements a greedy heuristic algorithm with no explicit objective function.
We implemented a greedy algorithm to select probes from the minimal set of equivalence groups that covered all target sequences in a gene family.
We implemented a greedy procedure which processed a few million pairwise alignments per hour.
First, starting from a seed node, ClusterONE implements a greedy search of candidate groups showing high cohesiveness.
To perform a local search of the space of possible genetic codes we implement a simple, greedy minimization algorithm: 1.
For example, in [10], the authors design a channel-opportunistic framework with the purpose of enhancing network throughput under delay constraints, which is implemented by designing a greedy algorithm.
This was implemented as a greedy algorithm which attempts only a single choice for content placement.
Given the properties of the Bayesian score, each procedure can be implemented as a greedy hill-climbing search with local operations that can be evaluated relatively easily.
Further, it implements an online greedy-matching algorithm to solve the ridesharing problem in order to propose matches between drivers and passengers.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com