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Segmenting the temporal sequence of behavioural data by identifying subsequences of constantly assigned prototypes leads to segments containing prototypical behaviour.
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The hash table used to identify subsequences for seed stores the pair of hash values of S D, i and the starting point i of S D, i.
A covariance model (CM) is finally created by applying the I nfernal (Nawrocki et al., 2009 ) tool on the identified subsequences.
A local algorithm attempts to identify subsequences sharing high similarity.
Each input data is randomized to determine whether the identified subsequences are significant or not.
Local alignments attempt to identify subsequences sharing high similarity [ 2].
The subsequence rules are thus intended to complement general membrane-binding mechanisms by identifying subsets of residues that correlate with specific-binding modes.
Similarly, PhyloPhlAn generates high-resolution microbial phylogenies by identifying 400 marker genes and building a phylogenetic tree from the subsequences of these proteins.
Unless otherwise specified, we simulated sequencing and perfect assembly by randomly selecting subsequences of haplotypes of a specific length.
GHOSTZ identifies long subsequences by employing a reduced amino acid alphabet in the seed search.
Our method explicitly identified important subsequences and showed significant performance improvements when compared with other state-of-the-art methods.
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