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Most nodes were supported by high bootstrap probabilities (>98%), with the exception of a clade comprising B. lanceolatum and B. floridae (77%).
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In the NJ tree, the monophyly of each of these families was supported with high bootstrap probability.
The strong relatedness of the viruses in the Corral cluster is supported by high bootstrap and posterior probability values in the phylogenetic analyses.
One should not be deluded by high bootstrap or posterior probability values, because high support for a doubtful clade is often obtained when a very large number of characters (like whole chloroplast genome sequences) but small number of taxa are used in phylogenetic analysis.
Although subclade A, D and E were supported by high bootstrap values and posterior probabilities, the phylogenetic relationships among species within these subclades were considered unresolved due to a high number of zero-length branches.
The position of M. sebastis was strongly supported by high bootstrap resampling and posterior probability values (100%) in the analyses of MP and BI, but received slightly lower support (88%) in the ML analysis.
The results showed two highly divergent phylogenetic clades with an average genetic distance of 2.8 ± 0.5% (the sequence divergence is 26 33 substitutions) between the domestic and wild camels, supported by high bootstrap values and Bayesian posterior probability, which suggests that the domestic and wild camels may belong to two different lineages.
Similar topologies, supported by high bootstrap (>70%) and posterior node (>0.70) probabilities, were consistently derived when various algorithms and different taxa and combinations of taxa were used.
These five lineages were supported by high bootstrap support values (>0.7) and posterior clade probabilities (>0.9).
The ML and Bayesian analyses based on 11 complete mitochondrial genomes, excluding control region yielded the identical tree topology supported by high bootstrap value (above 90%, Figure 5) and high posterior probabilities (above 0.97, Figure 5).
Phylogenetic analysis revealed the presence of two major cystatin forms supported by high bootstraps and posterior probabilities.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com