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During the stationary phase the highest activation was shown by genes coding for NtrC transcriptional regulator (fold-change 8.8) and an undetermined gene coding for a transcriptional regulator from TetR family (fold-change 13.2).
In P. freudenreichii CIRM-BIA1T, the ppk gene is followed by genes coding for NUDIX (a kind of pyrophosphohydrolase) and for an ABC phosphate transporter.
The remaining genes of the RpoS regulon were represented mainly by genes coding for hypothetical proteins with unknown function.
The third theme is dominated by genes coding for ligand-gated ion channels essential for neurotransmission [ 36].
However, B. japonicum thbs are often flanked by genes coding for the transcriptional regulator Rieske Fe-S, shikimate kinase and alcohol dehydrogenase; mesorhizobia thbs are often flanked by genes coding for permeases and tRNA-Trp, and R. leguminosarum thbs are often flanked by genes coding for membrane proteins.
Figure S1B shows that B. elkanii and B. japonicum sdgbs are mostly flanked by genes coding for proteins that function in nitrate/nitrite metabolism and sugar transport.
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For Aminobacter sp. DSM24755 a dihydropyrimidinase gene flanked by two genes coding for putative ABC transporter proteins was detected.
By regulating genes coding for cytokines, chemokines, enzymes and molecules with microbicidal activity, the IKK-NF-κB cascade offers important protection against stress and danger signals (Vallabhapurapu and Karin, 2009).
Another important cellular function is provided by the genes coding for subunits of the Clp protease (clpP1, clpC) that are under Rel-dependent, positive stringent control.
We show that gene expression in the synganglia of female adult ticks, as exemplified by the genes coding for the β-Actin and Na+-K+-ATPase, can be specifically inhibited by microinjection of dsRNA into unfed ticks.
We have performed a comparative analysis of protease genes in the two sequenced dicot genomes, Arabidopsis thaliana and Populus trichocarpa by using genes coding for proteases in the MEROPS database [ 1] for Arabidopsis to identify homologous sequences in Populus.
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