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These genes are presented by functional category of their gene products in Additional file 1 and are discussed below.
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The Nofima's Atlantic cod oligonucleotide microarray (ACIQ-2) produced by Agilent Technologies in the 4 × 44 k format included 60-mer probes to the unique transcripts from Ensembl and Unigene which were annotated by functional categories of GO and pathways of KEGG using bioinformatics package STARS [ 78, 86].
In addition, when evaluating genes by functional category, the distribution of genes containing SSRs in each category reflects that in the genome.
Assignment of EST fragments by functional category and the percent representation of each category in the collection of the O. novo-ulmi yeast LMW library.
In what follows selected transcripts from the group of primary stress response genes are first discussed by functional category, followed by consideration of the maturation-related genes, in order to relate their functions to known biochemical and physiological responses to water stress in the maize root tip.
Classification of reactions by functional category as presented in supplementary figure S1 (Supplementary Material online) follows previous authors (Reed et al. 2003; Duarte et al. 2004).
The clusters are named after significant enrichments of gene categories as determined by functional category enrichment using DAVID [41].
Annotated genes were classified by functional category.
Although some of their function are indicated by functional categories (GO terms) of experimental verified motifs, conclusive evidence of the role played by regulatory factors in the co-regulation of the two genes will be tested in experiments.
In addition to the increased statistical power by grouping shRNAs according to the functional category of their target genes, this method also drastically reduces the problem of off-target effects, as it is unlikely that multiple shRNAs have a similar off-target effect in a specific GO group.
Then we determined the functional category of each gene by using the functional category scheme (version 2.1) retrieved from FuncatDB.
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