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For protein coding genes only, the Xenopus and outgroup nucleotide sequences were aligned by eye, with reference to gene boundaries and were held in frame.
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Data were analyzed by eye with GeneMapper v.3.7 (Applied Biosystems).
The progressive series of gastropod eyes begins with a light-sensitive patch (usually with no mention of its origin), followed by eyes with an increasingly deep cup.
The recording electrode was placed in the centre of the eye with a reference electrode in the mouthparts.
This can be done by eye or with measuring cups.
Splice site predictions were made by neural network via the Berkeley Drosophila Genome Project and also by eye using Sequencher 4.2 (Genecodes), with reference to protein multiple sequence alignments.
VIP population responses show trends in the directions predicted by an eye-centered reference frame, but are inconsistent with the expectation for a head-centered reference frame (red, blue curves in Figure 7C,D).
Primers were designed by eye and checked with Primer3 [ 41].
Genetic research, notably with reference to eye pigments of the fruitfly, Drosophila melanogaster, has resulted in the description of a class of so-called ommochromes, which are phenoxazones.
We aligned all sequences by eye using BioEdit [56] and taking as reference common chaffinch sequences available from Genebank.
Using the better eye as reference is supported by quality of life studies in vision-related conditions, which have shown that the better eye is the major driver of overall quality of life and patient functioning.
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