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This can be illustrated by examining the deviations of the final focal hyperlink and relatedness from the traditional network.
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By examining the deviation between predicted and experimental results, we determined which of the UNIFAC models was more useful for the design of those processes as follows: either the original UNIFAC model or Dortmund-UNIFAC model should be used for the methanol recovery process.
We compared the alignment of interfaces from the different methods (Galinter, I2I-SiteEngine, and DaliLite) by examining the deviation of Cα atom coordinates of interface residues after corresponding transformations.
We evaluated stationarity, convergence, and burnin in MrBayes [ 47] by examining the deviation of split frequencies (approached zero), the overlay plot of generations versus log probability for multiple runs (which showed a clear plateau), the convergence diagnostics, and the potential scale reduction factors values (which were equal to 1).
The repeatability of four parallel reactions in one round and three experiments was validated by examining the standard deviation (SD) and relative standard deviation (RSD).
We assessed convergence by examining the standard deviation of split frequencies, which were <0.01 after 3 × 10 generations.
We confirmed that each of our MCMC runs had converged by examining the standard deviation of split frequencies and by checking for topological convergence with the online program AWTY [ 33].
Both convergence and appropriate sampling were confirmed by examining the standard deviation of the split frequencies between the two simultaneous runs and the Potential Scale Reduction Factor (PSRF) diagnostic.
In lieu of "statistical significance" for this data, some confidence in the extent of DE was obtained by examining the standard deviation (SD) in DE among the HK genes; taking any pigment-gene log2 fold-change more than or less than 2 SD around the HK mean to be likely to be meaningful (2 SD = -0.75 – 1.04; mean = 0.14; equating to a fold-change < 0.6 or > ~2.1).
We determined if chains converged to a stationary distribution by examining the average standard deviation of split frequencies and comparing the log-likelihoods of chains from different runs using ANOVA to establish that post burn-in samples were indeed sampling from islands of similar log-likelihoods and could be used in subsequent tree comparisons.
By examining the probability distribution, standard deviations and power spectra, flow behavior in the upper dilute region was found to be much different from that in the bottom dense region.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com