Sentence examples for by each program were from inspiring English sources

The poses obtained by each program were rescored using all the scoring functions considered in Table 1.

To check these assumptions, all the 10 poses given by each program were rescored by the other three programs, i.e., the 967,440 total poses obtained by the four programs were scored and ranked by each of the programs.

The sRNA-target pairs output by each program were counted and compared (Fig.  7).

The promoters and TFBS predicted by each program were aligned to delineate a consensus region indicative of a putative promoter.

Only significant hits as defined by each program were considered initially with at least 4 matching peptide masses.

The N50 and maximal length of the synthetic reads produced by each program were highly similar, but the quality of synthetic reads is higher with Newbler (Additional file 1: Table S4).

After performing the docking with the four programs, the average and standard deviation (SD) of the scores given by each program are calculated.

The frequencies of duplication and deletion of these three regions as called by each program are shown in Table 7.

We utilized two different programs, Dchip [12] and GenePattern [13], to call differentially expressed genes in a comprehensive way, since the predictive rate of any given calling program can be limited and the relative overlap between genes called by each program is low.

The amount of output generated by each program was simply the number of lines printed in the output file and is an important factor to consider because it ultimately determines the quantity of data that will have to be sorted through when developing a set of markers.

Each program was framed by key questions: How is the brain constructed before birth and in the first year of life?