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Based on miRNA discovery, the miRNAs putatively related to certain tissues development have been identified by deep sequencing technologies.
Whereas P. polycephalum is sequenced at The Genome Institute – Washington University, our laboratory at University of Tromsø investigates D. iridis by deep sequencing technologies.
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We analyzed siRNAs in J-type plants by deep sequencing technology.
Ryu et al. [ 27] identified 189 candidate novel microRNAs in human breast cancer cell lines by deep sequencing technology.
Second, small RNAs extracted from parthenogenetic females of the pea aphid were sequenced by deep sequencing technology and analysed using the miRDeep program [ 19].
The ABCA4 gene was analyzed by deep sequencing technology using a personal genome machine (Ion Torrent) with 200 bp read length.
Large numbers of EST sequences produced by deep sequencing technology have been deposited in the NCBI database and are being used for DNA fingerprinting, comparative mapping, and evolutionary analysis [ 26, 27].
Thus, even though naturally occurring K65R variants do not appear to be present in ARV-naïve individuals at levels detectable by currently available deep sequencing technologies, we cannot exclude the possibility that the steady state levels of such variants are higher in subtype C compared with subtype B virus isolates.
This is greatly facilitated by using new deep sequencing technologies that provide information about the repertoire of isoform-specific transcripts present in biological samples.
The p53 mutation status was determined for each PDX model by both RNA and DNA deep sequencing technologies.
This endeavor, however, has been facilitated by computational genomics approaches that leverage deep sequencing technologies.
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