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The first approach, called character mapping, begins by constructing a phylogenetic tree (that is, a depiction of the presumed relationship of a species of interest to its closest living relatives).
Consequently, COI sequences were validated by constructing a phylogenetic tree: sequences from nematodes were expected to reflect known phylogenetic relationships among closely related marine nematode species.
Independence of data from correlation due to phylogeny was tested by constructing a phylogenetic tree for the selected felids (Figure S1) from which standardised contrasts were calculated (Text S5; Table S1).
We began by constructing a phylogenetic network from the data (Fig. 1).
Comparative analysis of sugarcane SsCBP1's possible orthologous in green plants was done by constructing a phylogenetic tree containing highly similar plant sequences.
The phylogenetic relationships among the deduced amino acid sequences of CsLOX1 and those of other reported plant LOXs were determined by constructing a phylogenetic tree.
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We further confirmed this phylogenetic position by constructing a genomic phylogenetic tree based on the sequences of 31 universal genes from fully sequenced species belonging to the order Clostridiales (Fig. 3B).
We extended our analysis by constructing a Bayesian phylogenetic mixed model based on data from 145 prokaryotic genomes.
We first examined the phylogeny among wild and cultivated apples by constructing a neighbor-joining phylogenetic tree with pear as the outgroup using SNPs at fourfold degenerate sites (4D SNPs).
The relationships of translated Or sequences were analyzed by constructing a neighbor-joining phylogenetic tree using PAUP software [47].
HIV transmission between spouses was confirmed by constructing a neighbor-joining phylogenetic tree using the entire gag nucleotide sequences derived from the whole sample.
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