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Posterior probabilities were estimated by constructing a majority-rule consensus of trees sampled every 100 generations.
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Posterior probabilities (PP) were estimated by constructing a majority rule consensus of trees, sampled every 100 generations from 1,500,000 to 2,000,000 generations.
The posterior probabilities for clades were established by constructing a majority rule consensus tree for all trees generated after completion of the burnin.
Maximum likelihood bootstrap values were obtained by repeating the analysis 100 times and constructing a majority-rule consensus tree with PAUP* 4.0b10 [ 40].
The first 5000 trees corresponding to the 'burn-in' period were discarded, and the remaining trees were used to construct a majority-rule consensus tree.
The first 25% of sampled trees corresponding to the burn-in period was discarded, and the remaining trees were used to construct a majority-rule consensus tree.
Posterior probabilities were determined by constructing a 50% majority-rule tree of the 10,000 trees sampled after the burn-in.
To construct a majority rule consensus tree, the first 5,000 trees were eliminated as burn-in.
After removing the first 10% of trees as burn-in, posterior probabilities of nodes were assessed by constructing a 50% majority rule consensus tree.
The first 4000 (20%) trees were discarded as burn-in prior to constructing a 50% majority-rule consensus from the remaining 16,001 trees.
We summarized the 100 resulting ML trees per condition by constructing a strictly bifurcating majority rule consensus tree (i.e. without a lower limit on clade presence).
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