Sentence examples for by considering the read from inspiring English sources

By considering the read direction, all reads are assigned to ICAM4 (but not CTD-2369P2.8), because they are all reverse complementary to ICAM4.

In the first part, we show that by considering the reads of a patient jointly our new method that uses NGS data has higher predictive power than established methods.

Given the definition of MEC (minimum number of changeseq flips needed), we can initialize s 0, r) by considering the reads that start at position 0, and for each read compute the number of mismatches between the read and r and the read and the complement of r.

However, in actual experiments, the allele frequency at a locus will be estimated by considering the sequence read counts that cover the site.

The enrichment of a specific interactor with a bait of interest was determined by considering the number of reads obtained with the bait and luciferase and normalizing against the abundance of reads for luciferase, the bait and the library (Additional file 5).

Nevertheless, by considering the union of B. fulgida reads over the three datasets, the number of B. fulgida ORFs recovered for at least 80% of their length was twice the amount recovered by the best technology.

The assembly was done with gsAssembler (Newbler v2.7, Roche Diagnostics Corporation, Basel, Switzerland) by considering the default parameters, including a minimum read length: 20; seed length: 16; seed step: 12; minimum overlap length: 40 and minimum overlap identity: 90.

It considered the read counts bias by estimating the probability weighting function and used resampling strategy beyond the differentially expressed gene expression so that it can highlight GO categories more consistent with the known biology.

s i, r) is obtained by considering only the reads whose starting positions are no greater than i and it solves a subproblem of the full-length haplotype assembly where all reads are considered.

Unlike the reads for HuRef data, which are sequenced with the Sanger-based whole-genome shotgun sequencing and therefore are very long (each segment is thousands of base pairs long including both homozygous and heterozygous sites), here we consider the reads generated by the HTS technology (Wheeler et al., 2008).

Specifically, for a technology and an ORF, we considered the reads (generated by that technology) aligned with BLASTX to a particular ORF; the per-amino acid sequence coverage depth of an amino acid of that ORF is defined as the number of times that the given amino acid of the subject ORF was covered by the assigned reads.