Sentence examples for by computing the secondary from inspiring English sources

The net reproduction rate (R0) of the epidemic was calculated by computing the secondary attack rate by year since infection and multiplying by the survivorship of the index cases by year.

You measure the opportunity cost by computing the value of the road not taken.

Therefore, at each altitude, can we compute the secondary polarization electric field, E x, at each latitude point: where σP is the Pedersen conductivity and is given by.

An automated MATLAB script was written to compute the secondary structures of the target amino acid sequences based on secondary structure prediction consensus [49] [51].

PSIPRED [18] was utilized to compute the secondary structure that surrounds the ubiquitylation sites from the protein sequence.

Therefore, we first compute the secondary structure and then predict pseudoknotted structures.

These candidates were filtered in the following way: (1) RNAfold was used to compute the secondary structure.

RNAalifold 15, 16 uses a dynamic programming algorithm to compute the consensus secondary structure with minimum free energy by taking into account thermodynamic stability, sequence covariation together with RIBOSUM-like scoring matrices.

RNAfold uses dynamic programming to compute the MFE secondary structure of a given RNA sequence, but when run with option '-p' it also computes base-pair probabilities.

Computing the distance between two RNA secondary structures can contribute in understanding the functional relationship between them.

The data analysis pipeline next screened these genomic loci (in addition to 100 nucleotides of up- and down-stream flanking sequence) for the presence of a predicted hairpin secondary structure by computing free energy, shape probability (as determined by the RNAshapes program [34]) and the Randfold-computed [35] P-value of predicted secondary structures.