Normalized data was exported from MAS 5.0 to S-Plus (Insightful Corp., Seattle WA), where the gene expression values were transformed by computing the logarithm (base two).
For evaluating possible absolute or relative efficiencies of intron removal from the final mRNA, allelic score differences were calculated for 5' splice, 3' splice and branch point consensuses (respectively 6, 15 and 5 base lengths) by computing the difference in base likelihood for the allelic bases observed at the relevant base position in the consensus.
In addition, we estimated the accuracy of nucleosomal positioning measurements by computing the SNRs, based on two distinct nucleosome distributions (see Methods).
We examined spatial distributions within each session by computing the CV (based on unadjusted values) within each session and examining plots of monitored concentrations, session means, and reference site means.
Process the sequence data by computing the amino acid based descriptors for both the training and input data sets.
Estimate the chirp rate ( {widehat{mu}}_0 ) by computing the CSVR spectrum based on (11); 2) The de-chirp process using ( {widehat{mu}}_0 ) can be operated to eliminate the LFM modulation of the signal in (5).
To further explore their effects, we demonstrate the average effects of f and α on the RE by computing the average RE based on the values of f and α across all different (n, G, K) in Table 2.
The heuristic for calculating an optimal tanglegram for rooted phylogenetic networks that we describe in Section 3.2 is easily extended to a set of more than two rooted phylogenetic networks or trees, simply by computing the matrix H based on splits from all the networks or trees under consideration.
The IRTS algorithm is facilitated by carrying out the search on a reconfigurable tree, constructed by computing the reliabilities of symbols based on minimum mean-square error (MMSE) criterion and reordering the symbols according to their reliabilities.
This was done by computing the average household earnings as the base for determining the opportunity cost for the household.
