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We tested this assumption by computing a likelihood ratio test comparing a quadratic model to a linear model and detected no signs of nonlinearity.
Interactions between tertiles of plasma CRP and covariates in the regression models was tested for by computing a likelihood ratio test comparing the statistical fit of models with and without a two-factor interaction term.
We do this by computing a likelihood map for the particular pole locations and goal point in any trial and then normalizing it to produce a probability distribution on the 2D plane as described in Sect.
To transform responses from a population of neurons into quantitative predictions of behavioral sensitivity and choice probabilities, we decoded simulated population activity by computing a likelihood function as in previous studies (Sanger, 1996; Dayan and Abbott, 2001; Jazayeri and Movshon, 2006; Gu et al., 2010; Fetsch et al., 2011).
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The log-likelihood (LOD) score threshold was determined by computing a 1,000 permutation test for all traits.
We evaluated all trees in a likelihood framework by computing likelihood scores for all trees using the LG matrix in PHYML v3.0 [ 105] with the following command (phyml -i 01-Input.phy -c 4 -m LG -a e -o lr -f e -u 01-Input.tre -v e -d aa -b 0 -s NNI).
A rough, initial likelihood map is made by computing log likelihood values over a 50 × 50 grid on the [S1, S2] plane.
We tested whether it is appropriate to assume two different ω-ratios in the tree within the clades model by computing the likelihood under the simpler M0-model of codeml and performing a Likelihood Ratio Test (LRT).
This is followed by computing the likelihood of dominant supports within a cluster using (9) and E [ α S | r ] using (8).
We also assessed the possibility that the effect of each SNP on CRC risk was modified by age by computing the likelihood ratio test statistic for the model with a genotype-age interaction against the model with genotype and age terms only.
Furthermore the accuracy of two tests used in combination was analyzed by computing the likelihood ratios, together with the distribution of subjects with and without active tuberculosis, according to the responses to the tests.
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