Sentence examples for by computing a gene-gene from inspiring English sources

Thus, the filtering procedure used in DBF-MCL starts by computing a gene-gene distance matrix D.

Biological repeats of each experiment were combined by computing a mean of the measured gene expression.

We assessed the statistical significance of the differential expression of genes by computing a q-value (i.e. minimum FDR) for each gene (Table 1).

The field includes AD gene clustering by computing gene order which generates higher quality gene clustering patterns than most other clustering methods.

Some species tree estimation methods operate by computing gene trees, encoding each computed gene tree as a set of quartet trees, and determining the dominant quartet tree for every four species (i.e., the quartet tree that appears the most frequently of the three possible unrooted quartet trees).

If a metagene contains more than one gene in a species, Pearson correlations for metagene pairs were computed by averaging multiple gene-gene Pearson correlations.

Grouping of genes was done by computing over-representation of regulated genes in gene ontology (GO) classes [ 14].

It does this by simultaneously clustering genes and computing a shared alignment for the genes in each cluster.

We used this predictor in order to rank the annotated genes for a given enzyme class, where a p-value was associated to each predicted gene by computing the probability of ranking that gene in the given percentile if it were picked at random from the list of genes.

A cluster meta-gene score was obtained for each sample by computing the signed average mean gene.

Gene set enrichment analysis was carried out by computing overlaps with canonical pathways and gene ontology gene sets obtained from the broad institute [ 19].