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We started by compiling a dataset containing all the rice LTR retrotransposon sequences available from the literature [ 28, 44, 45] and from the public databanks [ 46, 47].
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By compiling a historical dataset for 6,515 native populations with new data in nearly 3,000 populations, the authors tested for evolutionary changes in shell albedo.
We tested for evolutionary changes in shell albedo that might have been driven by the warming of the climate in Europe over the last half century by compiling an historical dataset for 6,515 native populations of C. nemoralis and comparing this with new data on nearly 3,000 populations.
Finally, we demonstrated the viability of the primers and the protocols, by compiling a full Dinornis microsatellite dataset representing fossils of c. 600 5000 years of age.
To detect gene relationships in the grapevine genome, we constructed a grapevine gene co-expression network (GGCN) by compiling a total of 374 publically available grapevine microarray datasets.
In order to identify non-classically secreted proteins that are missed by SecretomeP, we have also compiled a dataset of experimentally determined ES proteins of parasitic helminths for homology-based prediction (details in the Methods section).
From a query protein sequence, SIFT compiles a dataset of functionally related protein sequences by searching a protein database using the PSI-BLAST algorithm.
We have recently compiled a dataset of ribosomal protein (RP) genes [5].
We compiled a dataset of 76 RP gene orthologs from 22 eukaryotes.
We compiled a dataset of male and female size (body mass, g) for 1520 species of birds.
We compiled a dataset of publicly available full-length 16S bacterial ribosomal RNA sequences from NCBI Genbank.
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