Sentence examples for by comparing the read from inspiring English sources

The mA regions (mA peaks) were identified by comparing the read abundance between mA-Seq and RNA-seq samples of the same locus according to a method previously described.

Differential expression (DE) between the read pools from Yellow and from Colored individuals was examined by comparing the read mappings between the two groups using edgeR [ 65- 67].

DROMPA calls peaks by comparing the read distribution of the ChIP sample with that of the corresponding input sample (see Experimental Procedures).

For mA analysis, mA regions (mA peaks) were identified by comparing the read abundance between mA-seq and RNA-seq samples of the same loci according to a method previously described.

In addition, duplications are identified using the CNV function across each chromosome, and chromosomal anueploidy is calculated by comparing the read depth of each chromosome to the average read depth within the (diploid) library.

Functional annotation was done by comparing the reads against the Clusters of Orthologous Genes (COGs) [45] and TIGRFAMS [46] databases using RPSBLAST [47] (E-value cut-off of 10-5).

We then discarded non-coding reads by comparing the reads against the fRNAdb database using the Megablast algorithm with an e-value cutoff of 1e-20 [ 85].

We eliminate these by comparing the reads identified in the previous step to the UniVec database (www.ncbi.nlm.nih.gov/tools/vecscreen/univec) using the vecscreen program, and removing any reads with vector sequence.

Known non-coding RNAs including tRNA, rRNA, snoRNA, snRNA and other non-coding RNA sequences were annotated by comparing the reads with the Rfam database http://www.sanger.ac.uk/Software/Rfam/ using BLAST (identity ≥ 80%).

Results at rank Phylum show that MTR provided a population characterization of the Coral dataset very similar to the one given in Rodriguez-Brito et al. (2007), which was obtained by comparing the reads with the SEED non-redundant database (Overbeek et al., 2004) using BLASTx.

By comparing the reading of a poem to a journey, she is able to ramble more or less wherever she likes, while at the same time insisting that meandering is the point.