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The rates for the various types of genotyping error were calculated by comparing the genotypes from the WGA samples to the reference produced from unamplified samples (described above).
TRIMM identifies transmission distortion for sets of SNPs by comparing the genotypes of the offspring with those of the hypothetical "complement" child who would have inherited the two parental alleles not transmitted to the observed affected offspring at each locus.
STRUCTURE [44], [45] was used to assess population structure within and between sample sets by comparing the genotypes of 28 SNPs at genomic loci unlinked to DD. STRUCTURE was executed with a burn-in length of 1,000,000 followed by 1,000,000 iterations until completion.
Mendelian inconsistencies are usually identified by comparing the genotypes of one or both parents to the genotypes of their offspring.
By comparing the genotypes of the two individuals, we identified positions that were heterozygous in NA12878 and homozygous for the reference allele in NA12891.
The paternity of each offspring was assigned by comparing the genotypes of adults and offspring using the CERVUS 3.0 software [ 50], based on a maximum-likelihood paternity assignment.
Similar(41)
By comparing the genotyping assignments with the genotyping data of Liu et al. [25] we could demonstrate >99% accuracy for each of these approaches.
Performance was evaluated by comparing the genotyping results obtained from microarray with those generated by LiPA.
Performance was evaluated by comparing the genotyping results obtained from real-time PCR with those generated by LiPA v. 1 and partial NS5B sequencing.
Association with the severity of SARS infection was then estimated by comparing the genotype frequencies and allele frequencies of all the SNPs between the two groups of SARS patients.
Mutations were detected by comparing the genotype of the offspring with that of its biological parents.
More suggestions(18)
by comparing the values
by deleting the genotypes
by finding the genotypes
by masking the genotypes
by dichotomizing the genotypes
by standardizing the genotypes
by comparing the AUCs
by using the genotypes
by treating the genotypes
by encoding the genotypes
by comparing the sequences
by comparing the shadows
by determining the genotypes
by comparing the models
by fitting the genotypes
by inferring the genotypes
by comparing the studies
by comparing the intensities
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