By comparing the expression of PMC expressed genes to those expressed in seedlings and tricellular pollen they could identify 1,158 PMC-preferential genes.
We first sought to determine the effects of the allele design by comparing the expression of the four alleles that express CFP (Cerulean).
By comparing the expression profile between the different stages, we detected 5768 differentially-expressed genes (DEGs) between infancy and adolescence, and 6787 DEGs were found between adolescence and adulthood.
By comparing the expression of medaka barhl1 and barhl2, we found that they are both expressed in the retina, in a pattern reminiscent of zebrafish barhl1.2 and barhl2 respectively.
We thus directly tested this hypothesis by comparing the expression of cxcr4a in wild type and in ody/cxcr4b mutants.
By comparing the expression pattern of this gene with the one from mouse Bmp10 we concluded that it is zebrafish bmp10.
By comparing the expression patterns, genes were identified as typically up-regulated in EFT cells and other cells (data not shown).
The existence of population-specific differences in expression levels of probes was determined by comparing the expression data using a Kruskal-Wallis test.
The classifiers trained by Messina decide the class of an unknown sample by comparing the expression of a single gene in that sample to a threshold value.
Additionally, we also attempted to identify potential genes associated with pyrethroid resistance by comparing the expression profiles of the two strains although different mosquito life stages where pooled for the sequencing.
By comparing the expression profiling of miRNAs and target genes, only about half of these putative target genes remained due to the negative relationship of the expression patterns between miRNA and its target mRNA (Table 1).
