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We also evaluated the assemblies by comparing the assembled isogroups to white spruce unigenes using the approach described below.
The quality of the assembly was assessed by comparing the assembled contigs with a reference set containing well defined mRNA sequences.
Nick began by comparing the assembled protesters to latter-day ancient Celts defending the shore from an unwanted horde - the Romans - before explaining how actually they were more like Anglo-Saxons fending off that "Norman bastard" William the Conqueror, manifest in the present day in the form of refugees trying to escape conflicts in the Middle East and Africa.
BLAST matches produced by comparing the assembled unigenes with the CDS deduced from the Hypericum BAC clone HM061166.1.
NTRs were determined by comparing the assembled transcripts from all mapped reads to the annotated gene regions using the Cuffcompare program with parameters –r –s.
In McComish et al. (2010), the separation was performed by comparing the assembled contigs to a set of closely related reference mt genomes.
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Quality was assessed by comparing the assembly of 454 reads with a subset of ten BACs individually sequenced and assembled using Sanger reads.
With this approach we have thus successfully combined a detailed microscopic model built from molecular biological data and a systems biological parameter optimization by comparing the completely assembled system to macroscopic experimental observations.
Briefly, putative match to the 454 sequences were identified first by comparing the MiSeq assembled transcript to the 454 database using BLASTn search.
Taxonomic assignments can be evaluated by comparing the contigs assembled from the data to known ones, e.g. in the Ribosomal Database Project [ 1].
We identified gene clusters and gene families containing transcripts primarily expressed in silk glands by comparing the newly assembled L. hesperus transcriptome to transcripts described in Clarke et al (2014) using BLASTN.
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by inserting the assembled
by imploring the assembled
by telling the assembled
by comparing the obtained
by querying the assembled
by using the assembled
by asking the assembled
by BLASTing the assembled
by matching the assembled
by searching the assembled
by translating the assembled
by aligning the assembled
by adopting the assembled
by scaling the assembled
by comparing the assembly
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com